SecReT6, T6SS database

Agrobacterium tumefaciens

Experimental investigation has been performed.

Bioinformatics investigation has been performed

T6SS ID	Type	Organism	Replicon (Accession)	Location	Function
T6SS01103	i5	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1612910..1635897	anti-bacterial
T6SS01241	i5	Agrobacterium tumefaciens strain 12D1	chromosome (NZ_CP033032)	1717106..1741674	anti-bacterial
T6SS01242	i5	Agrobacterium tumefaciens strain 1D1108	chromosome (NZ_CP032922)	2042910..2067248	anti-bacterial
T6SS01244	i5	Agrobacterium tumefaciens strain 1D1460	chromosome (NZ_CP032927)	1440614..1465080	anti-bacterial
T6SS01245	i5	Agrobacterium tumefaciens strain 15955	chromosome (NZ_CP032918)	1999377..2023762	anti-bacterial
T6SS01246	i5	Agrobacterium tumefaciens strain A6	chromosome (NZ_CP033028)	2000609..2024994	anti-bacterial

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Regulator ID	Locus tag (Gene)	Related T6SS	Regulator type	Regulatory pathway	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID	Target (Regulation)

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Effector ID	Locus tag (Gene)	Classification	Cognate immunity protein	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID
EFF01857	At1D1108_RS23245 (Tae4)	Tae	-	T6SS01242	Agrobacterium tumefaciens strain 1D1108	chromosome (NZ_CP032922)	2064623..2065123 (+)	503526812
EFF01862	At1D1460_RS28410 (Tae4)	Tae	-	T6SS01244	Agrobacterium tumefaciens strain 1D1460	chromosome (NZ_CP032927)	1466206..1467774 (+)	1815605961
EFF01864	At15955_RS22930 (Tae4)	Tae	-	T6SS01245	Agrobacterium tumefaciens strain 15955	chromosome (NZ_CP032918)	2027347..2027895 (+)	503526804
EFF01866	AtA6_RS23270 (Tae4)	Tae	-	T6SS01246	Agrobacterium tumefaciens strain A6	chromosome (NZ_CP033028)	2028579..2029127 (+)	503526804
EFF01868	At1D1609_RS29810	Tae	IMU00350	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1637023..1638591 (+)	1852493397
EFF01828	At1D1609_44740 (V2a)	Tde	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1637023..1638591 (+)	1349686713
EFF01855	At12D1_RS23110 (E4)	Tde	IMU00379	T6SS01241	Agrobacterium tumefaciens strain 12D1	chromosome (NZ_CP033032)	1742752..1743675 (+)	489600126
EFF01827	At1D1609_44690 (hcp)	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1632132..1632608 (+)	1349686708
EFF01843	At1D1609_RS18895	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	713242..715506 (-)	1150861261
EFF01844	At1D1609_RS22460	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1475318..1477582 (+)	1352522504
EFF01845	At1D1609_RS23245	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1633633..1635897 (+)	1352522526
EFF01846	At1D1609_RS26290	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	2295823..2298090 (+)	1352522879
EFF01854	At12D1_RS23080 (Hcp)	-	-	T6SS01241	Agrobacterium tumefaciens strain 12D1	chromosome (NZ_CP033032)	1737810..1738286 (+)	489600119
EFF01856	At1D1108_RS23235 (hcp)	-	-	T6SS01242	Agrobacterium tumefaciens strain 1D1108	chromosome (NZ_CP032922)	2063637..2064113 (+)	490566468
EFF01858	At1D1108_RS23280 (E11)	-	IMU00380	T6SS01242	Agrobacterium tumefaciens strain 1D1108	chromosome (NZ_CP032922)	2072000..2073136 (+)	1421606991
EFF01861	At1D1460_RS21380 (hcp)	-	-	T6SS01244	Agrobacterium tumefaciens strain 1D1460	chromosome (NZ_CP032927)	1461315..1461791 (+)	489600119
EFF01863	At15955_RS22890 (hcp)	-	-	T6SS01245	Agrobacterium tumefaciens strain 15955	chromosome (NZ_CP032918)	2020110..2020586 (+)	490566468
EFF01865	AtA6_RS23230 (hcp)	-	-	T6SS01246	Agrobacterium tumefaciens strain A6	chromosome (NZ_CP033028)	2021342..2021818 (+)	490566468
EFF01867	At1D1609_RS22470	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1478708..1479313 (+)	1349686563

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Immunity protein ID	Locus tag (Gene)	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Cognate effector
IMU00350	At1D1609_44750 (v3a)	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1638588..1639688 (+)	1349686714	EFF01868
IMU00379	At12D1_RS23115 (I4)	T6SS01241	Agrobacterium tumefaciens strain 12D1	chromosome (NZ_CP033032)	1743686..1744216 (+)	489600127	EFF01855
IMU00380	At1D1108_RS23285 (I11_1)	T6SS01242	Agrobacterium tumefaciens strain 1D1108	chromosome (NZ_CP032922)	2073146..2074138 (+)	490566480	EFF01858

Experimental investigation has been performed.

Bioinformatics investigation has been performed

ID	Locus tag (Gene)	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Response to T6SS attack	Known or putative function

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Accessory protein ID	Locus tag (Gene)	Related T6SS	Type	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Related structure protein	Related effector